Herschlag, D. : rechercher sur Z-Library

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1

Biological Phosphoryl-Transfer Reactions: Understanding Mechanism and Catalysis

Lassila, Jonathan K., Zalatan, Jesse G., Herschlag, Daniel

Journal:

Annual Review of Biochemistry

Année:

2011

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2011

2

Understanding Nucleic Acid–Ion Interactions

Lipfert, Jan, Doniach, Sebastian, Das, Rhiju, Herschlag, Daniel

Journal:

Annual Review of Biochemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2014

3

C HALLENGESIN E NZYME M ECHANISMAND E NERGETICS

Kraut, Daniel A., Carroll, Kate S., Herschlag, Daniel

Journal:

Annual Review of Biochemistry

Année:

2003

Langue:

english

Fichier:

PDF, 769 KB

english, 2003

4

Programmable assembly of pressure sensors using pattern-forming bacteria

Cao, Yangxiaolu, Feng, Yaying, Ryser, Marc D, Zhu, Kui, Herschlag, Gregory, Cao, Changyong, Marusak, Katherine, Zauscher, Stefan, You, Lingchong

Journal:

Nature Biotechnology

Année:

2017

Langue:

english

Fichier:

PDF, 3.80 MB

english, 2017

5

Reynolds number limits for jet propulsion: A numerical study of simplified jellyfish

Gregory Herschlag, Laura Miller

Journal:

Journal of Theoretical Biology

Année:

2011

Langue:

english

Fichier:

PDF, 914 KB

english, 2011

6

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

Laederach, Alain, Das, Rhiju, Vicens, Quentin, Pearlman, Samuel M, Brenowitz, Michael, Herschlag, Daniel, Altman, Russ B

Journal:

Nature Protocols

Année:

2008

Langue:

english

Fichier:

PDF, 733 KB

english, 2008

7

Isotope-Edited FTIR of Alkaline Phosphatase Resolves Paradoxical Ligand Binding Properties and Suggests a Role for Ground-State Destabilization

Andrews, Logan D., Deng, Hua, Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Année:

2011

Langue:

english

Fichier:

PDF, 3.09 MB

english, 2011

8

MECHANISTIC ASPECTS OF ENZYMATIC CATALYSIS:Lessons from Comparison of RNA and Protein Enzymes 0

Narlikar, Geeta J., Herschlag, Daniel

Journal:

Annual Review of Biochemistry

Année:

1997

Langue:

english

Fichier:

PDF, 360 KB

english, 1997

9

ATP and MO25α Regulate the Conformational State of the STRADα Pseudokinase and Activation of the LKB1 Tumour Suppressor

Zeqiraj, Elton, Filippi, Beatrice Maria, Goldie, Simon, Navratilova, Iva, Boudeau, Jérôme, Deak, Maria, Alessi, Dario R., van Aalten, Daan M. F., Herschlag, Daniel

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 3.22 MB

english, 2009

10

Protein enhancement of hammerhead ribozyme catalysis

Tsuchihashi, Z, Khosla, M, Herschlag, D

Journal:

Année:

1993

Langue:

english

Fichier:

PDF, 1.27 MB

english, 1993

11

An Exact Solution for Stokes Flow in a Channel with Arbitrarily Large Wall Permeability

Herschlag, G., Liu, J.-G., Layton, A. T.

Journal:

SIAM Journal on Applied Mathematics

Année:

2015

Fichier:

PDF, 852 KB

2015

12

An Exact Solution for Stokes Flow in a Channel with Arbitrarily Large Wall Permeability

Herschlag, G., Liu, J.-G., Layton, A. T.

Journal:

SIAM Journal on Applied Mathematics

Année:

2015

Langue:

english

Fichier:

PDF, 852 KB

english, 2015

13

From sequence to nanostructure: a critical base pair in RNA k-turns that confers folding and structural characteristics, and correlates with biological function

Huang, Lin, Shi, Xuesong, Herschlag, Daniel, Lilley, David

Journal:

Acta Crystallographica Section A Foundations and Advances

Année:

2015

Fichier:

PDF, 382 KB

2015

14

High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding

Denny, Sarah Knight, Bisaria, Namita, Yesselman, Joseph David, Das, Rhiju, Herschlag, Daniel, Greenleaf, William James

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 9.33 MB

english, 2018

15

Increasing the length of poly-pyrimidine bulges broadens RNA conformational ensembles with minimal impact on stacking energetics

Merriman, Dawn K, Yuan, Jiayi, Shi, Honglue, Majumdar, Ananya, Herschlag, Daniel, Al-Hashimi, Hashim M

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2018

16

Determination of the conformational ensemble of the TAR RNA by X-ray scattering interferometry

Shi, Xuesong, Walker, Peter, Harbury, Pehr B., Herschlag, Daniel

Journal:

Nucleic Acids Research

Année:

2017

Langue:

english

Fichier:

PDF, 4.11 MB

english, 2017

17

An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis.

Herschlag, D., Khosla, M., Tsuchihashi, Z., Karpel, R.L.

Journal:

The EMBO Journal

Année:

1994

Langue:

english

Fichier:

PDF, 2.66 MB

english, 1994

18

The roles of structural dynamics in the cellular functions of RNAs

Ganser, Laura R., Kelly, Megan L., Herschlag, Daniel, Al-Hashimi, Hashim M.

Journal:

Nature Reviews Molecular Cell Biology

Année:

2019

Langue:

english

Fichier:

PDF, 2.06 MB

english, 2019

19

Quantifying Gerrymandering in North Carolina

Herschlag, Gregory, Kang, Han Sung, Luo, Justin, Graves, Christy Vaughn, Bangia, Sachet, Ravier, Robert, Mattingly, Jonathan C.

Journal:

Statistics and Public Policy

Année:

2020

Fichier:

PDF, 2.38 MB

2020

20

Structure and Function Converge To Identify a Hydrogen Bond in a Group I Ribozyme Active Site

Marcello Forconi, Raghuvir N. Sengupta, Mao-Chin Liu, Alan C. Sartorelli, Joseph A. Piccirilli, Daniel Herschlag

Journal:

Angewandte Chemie

Année:

2009

Langue:

english

Fichier:

PDF, 671 KB

english, 2009

21

Structure and Function Converge To Identify a Hydrogen Bond in a Group I Ribozyme Active Site

Marcello Forconi, Raghuvir N. Sengupta, Mao-Chin Liu, Alan C. Sartorelli, Joseph A. Piccirilli, Daniel Herschlag

Journal:

Angewandte Chemie International Edition

Année:

2009

Langue:

english

Fichier:

PDF, 671 KB

english, 2009

22

The role of induced fit and conformational changes of enzymes in specificity and catalysis

Daniel Herschlag

Journal:

Bioorganic Chemistry

Année:

1988

Langue:

english

Fichier:

PDF, 2.50 MB

english, 1988

23

Mapping the transition state for ATP hydrolysis: implications for enzymatic catalysis

Suzanne J. Admiraal, Daniel Herschlag

Journal:

Chemistry & Biology

Année:

1995

Langue:

english

Fichier:

PDF, 3.30 MB

english, 1995

24

The wide reach of enzymology: from bioorganic chemistry to chemical biology and beyond Mechanisms

Carol A Fierke, Dan Herschlag

Journal:

Current Opinion in Chemical Biology

Année:

2006

Langue:

english

Fichier:

PDF, 80 KB

english, 2006

25

The wide reach of enzymology: from bioorganic chemistry to chemical biology and beyond: [Current Opinion in Chemical Biology 2006, 10:453-454]

Carol A Fierke, Dan Herschlag

Journal:

Current Opinion in Chemical Biology

Année:

2007

Fichier:

PDF, 57 KB

2007

26

A repulsive field: advances in the electrostatics of the ion atmosphere

Vincent B Chu, Yu Bai, Jan Lipfert, Daniel Herschlag, Sebastian Doniach

Journal:

Current Opinion in Chemical Biology

Année:

2008

Langue:

english

Fichier:

PDF, 707 KB

english, 2008

27

The role of the cleavage site 2′-hydroxyl in the Tetrahymena group I ribozyme reaction

Aiichiro Yoshida, Shu-ou Shan, Daniel Herschlag, Joseph A Piccirilli

Journal:

Chemistry & Biology

Année:

2000

Langue:

english

Fichier:

PDF, 288 KB

english, 2000

28

Catalytic promiscuity and the evolution of new enzymatic activities

Patrick J O'Brien, Daniel Herschlag

Journal:

Chemistry & Biology

Année:

1999

Langue:

english

Fichier:

PDF, 1.69 MB

english, 1999

29

10.1038/26864

Herschlag, Daniel

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 165 KB

english, 1998

30

DNA cleavage catalysed by the ribozyme from Tetrahymena

Herschlag, Daniel, Cech, Thomas R.

Journal:

Année:

1990

Fichier:

PDF, 723 KB

1990

31

10.1038/75132

Herschlag, Daniel, Russell, Rick, Millett, Ian S., Doniach, Sebastian

Journal:

Natural Structural Biology

Année:

2000

Langue:

english

Fichier:

PDF, 387 KB

english, 2000

32

Multiple native states reveal persistent ruggedness of an RNA folding landscape

Solomatin, Sergey V., Greenfeld, Max, Chu, Steven, Herschlag, Daniel

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 460 KB

english, 2010

33

The far reaches of enzymology

Zalatan, Jesse G, Herschlag, Daniel

Journal:

Nature Chemical Biology

Année:

2009

Langue:

english

Fichier:

PDF, 332 KB

english, 2009

34

Isolation of a local tertiary folding transition in the context of a globally folded RNA

Narlikar, Geeta J., Herschlag, Daniel

Journal:

Natural Structural Biology

Année:

1996

Fichier:

PDF, 1.02 MB

1996

35

Implications of molecular heterogeneity for the cooperativity of biological macromolecules

Solomatin, Sergey V, Greenfeld, Max, Herschlag, Daniel

Journal:

Nature Structural and Molecular Biology

Année:

2011

Langue:

english

Fichier:

PDF, 598 KB

english, 2011

36

Pyrophosphate formation for acetyl phosphate and orthophosphate anions in concentrated aqueous salt solutions does not provide evidence for a metaphosphate intermediate

Herschlag, Daniel., Jencks, William P.

Journal:

Journal of the American Chemical Society

Année:

1986

Langue:

english

Fichier:

PDF, 1.22 MB

english, 1986

37

Nucleophiles of high reactivity in phosphoryl transfer reactions: .alpha.-effect compounds and fluoride ion

Herschlag, Daniel, Jencks, William P.

Journal:

Journal of the American Chemical Society

Année:

1990

Langue:

english

Fichier:

PDF, 824 KB

english, 1990

38

Robust design and optimization of retroaldol enzymes

Eric A. Althoff, Ling Wang, Lin Jiang, Lars Giger, Jonathan K. Lassila, Zhizhi Wang, Matthew Smith, Sanjay Hari, Peter Kast, Daniel Herschlag, Donald Hilvert, David Baker

Journal:

Protein Science

Année:

2012

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2012

39

2′-Fluoro Substituents Can Mimic Native 2′-Hydroxyls within Structured RNA

Marcello Forconi, Jason P. Schwans, Rishi H. Porecha, Raghuvir N. Sengupta, Joseph A. Piccirilli, Daniel Herschlag

Journal:

Chemistry & Biology

Année:

2011

Langue:

english

Fichier:

PDF, 382 KB

english, 2011

40

Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs

Vincent B Chu, Daniel Herschlag

Journal:

Current Opinion in Structural Biology

Année:

2008

Langue:

english

Fichier:

PDF, 648 KB

english, 2008

41

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

Jonikas, M. A., Radmer, R. J., Laederach, A., Das, R., Pearlman, S., Herschlag, D., Altman, R. B.

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1.19 MB

english, 2009

42

New pathways in folding of the Tetrahymena group I RNA enzyme

Rick Russell, Daniel Herschlag

Journal:

Journal of Molecular Biology

Année:

1999

Langue:

english

Fichier:

PDF, 295 KB

english, 1999

43

Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway

Rick Russell, Daniel Herschlag

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 263 KB

english, 2001

44

RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop

Eric J. Sorin, Mark A. Engelhardt, Daniel Herschlag, Vijay S. Pande

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 1002 KB

english, 2002

45

Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations

Keiji Takamoto, Rhiju Das, Qin He, Sebastian Doniach, Michael Brenowitz, Daniel Herschlag, Mark R. Chance

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 829 KB

english, 2004

46

The Paradoxical Behavior of a Highly Structured Misfolded Intermediate in RNA Folding

Rick Russell, Rhiju Das, Hyejean Suh, Kevin J. Travers, Alain Laederach, Mark A. Engelhardt, Daniel Herschlag

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 668 KB

english, 2006

47

Structural Transitions and Thermodynamics of a Glycine-Dependent Riboswitch from Vibrio cholerae

Jan Lipfert, Rhiju Das, Vincent B. Chu, Madhuri Kudaravalli, Nathan Boyd, Daniel Herschlag, Sebastian Doniach

Journal:

Journal of Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2007

48

Comparative Enzymology in the Alkaline Phosphatase Superfamily to Determine the Catalytic Role of an Active-Site Metal Ion

Jesse G. Zalatan, Timothy D. Fenn, Daniel Herschlag

Journal:

Journal of Molecular Biology

Année:

2008

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2008

49

The Ligand-Free State of the TPP Riboswitch: A Partially Folded RNA Structure

Mona Ali, Jan Lipfert, Soenke Seifert, Daniel Herschlag, Sebastian Doniach

Journal:

Journal of Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 2.39 MB

english, 2010

50

Multiple Unfolding Events during Native Folding of the Tetrahymena Group I Ribozyme

Yaqi Wan, Hyejean Suh, Rick Russell, Daniel Herschlag

Journal:

Journal of Molecular Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2010